IL_6SV4_120

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_120 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.1881

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6SV4|1|2b|G|616
6SV4|1|2b|U|617
6SV4|1|2b|U|618
6SV4|1|2b|A|619
6SV4|1|2b|A|620
6SV4|1|2b|A|621
6SV4|1|2b|A|622
*
6SV4|1|2b|U|1104
6SV4|1|2b|C|1105

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain cb

40S ribosomal protein S23-A

Chain eb

40S ribosomal protein S26-A