IL_6SV4_131
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|2b|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_131 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.1456
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6SV4|1|2b|C|874
6SV4|1|2b|G|875
6SV4|1|2b|G|876
6SV4|1|2b|G|877
6SV4|1|2b|G|878
*
6SV4|1|2b|C|950
6SV4|1|2b|A|951
6SV4|1|2b|A|952
6SV4|1|2b|G|953
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Qb
- 40S ribosomal protein S1-A
- Chain XY
- 60S ribosomal protein L30
- Chain Yb
- 40S ribosomal protein S13
- Chain eb
- 40S ribosomal protein S26-A
Coloring options: