IL_6SV4_182

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

6SV4|1|2c|C|114, 6SV4|1|2c|G|115

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_182 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.4287

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6SV4|1|2c|U|113
6SV4|1|2c|C|114
6SV4|1|2c|G|115
6SV4|1|2c|U|116
*
6SV4|1|2c|A|300
6SV4|1|2c|A|301

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S4-A

Chain Vc

40S ribosomal protein S8-A

Chain Xc

40S ribosomal protein S11-A