IL_6SV4_205
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6SV4|1|2c|A|579, 6SV4|1|2c|U|581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_205 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1358
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SV4|1|2c|G|562
6SV4|1|2c|U|563
6SV4|1|2c|G|564
6SV4|1|2c|C|565
6SV4|1|2c|C|566
6SV4|1|2c|A|567
6SV4|1|2c|G|568
*
6SV4|1|2c|C|575
6SV4|1|2c|G|576
6SV4|1|2c|G|577
6SV4|1|2c|U|578
6SV4|1|2c|A|579
6SV4|1|2c|A|580
6SV4|1|2c|U|581
6SV4|1|2c|U|582
6SV4|1|2c|C|583
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Ac
- 40S ribosomal protein S3
- Chain cc
- 40S ribosomal protein S23-A
- Chain gc
- 40S ribosomal protein S30-A
- Chain nc
- Transfer RNA; tRNA
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