IL_6SV4_217
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUC*GGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_217 not in the Motif Atlas
- Geometric match to IL_4V88_430
- Geometric discrepancy: 0.213
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6SV4|1|2c|G|871
6SV4|1|2c|G|872
6SV4|1|2c|U|873
6SV4|1|2c|C|874
*
6SV4|1|2c|G|953
6SV4|1|2c|G|954
6SV4|1|2c|A|955
6SV4|1|2c|C|956
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Qc
- 40S ribosomal protein S1-A
- Chain Yc
- 40S ribosomal protein S13
- Chain fc
- 40S ribosomal protein S27-A
- Chain zY
- 60S ribosomal protein L30
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