3D structure

PDB id
6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The cryo-EM structure of SDD1-stalled collided trisome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SV4_222 not in the Motif Atlas
Geometric match to IL_4V88_436
Geometric discrepancy: 0.1979
The information below is about IL_4V88_436
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

6SV4|1|2c|C|990
6SV4|1|2c|G|991
6SV4|1|2c|A|992
6SV4|1|2c|A|993
6SV4|1|2c|G|994
*
6SV4|1|2c|C|1010
6SV4|1|2c|G|1011
6SV4|1|2c|U|1012
6SV4|1|2c|A|1013
6SV4|1|2c|G|1014

Current chains

Chain 2c
18S rRNA

Nearby chains

Chain ZQ
Large subunit ribosomal RNA; LSU rRNA
Chain Zc
40S ribosomal protein S14-A
Chain ec
40S ribosomal protein S26-A
Chain zS
60S ribosomal protein L41-B
Chain zW
60S ribosomal protein L2-A

Coloring options:


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