IL_6SV4_279
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGGC*GUGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_279 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.2925
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|BQ|G|725
6SV4|1|BQ|G|726
6SV4|1|BQ|G|727
6SV4|1|BQ|G|728
6SV4|1|BQ|C|729
*
6SV4|1|BQ|G|740
6SV4|1|BQ|U|741
6SV4|1|BQ|G|742
6SV4|1|BQ|C|743
6SV4|1|BQ|A|744
6SV4|1|BQ|C|745
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
Coloring options: