IL_6SV4_310

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6SV4|1|BQ|A|1221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_310 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.3173

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6SV4|1|BQ|U|1218
6SV4|1|BQ|C|1219
6SV4|1|BQ|U|1220
6SV4|1|BQ|A|1221
6SV4|1|BQ|G|1222
6SV4|1|BQ|A|1223
6SV4|1|BQ|C|1224
6SV4|1|BQ|A|1225
6SV4|1|BQ|G|1226
*
6SV4|1|BQ|C|1283
6SV4|1|BQ|C|1284
6SV4|1|BQ|G|1285
6SV4|1|BQ|A|1286
6SV4|1|BQ|A|1287

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain BH

60S ribosomal protein L20-A

Chain BU

60S acidic ribosomal protein P0