IL_6SV4_317

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_317 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0922

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6SV4|1|BQ|G|1444
6SV4|1|BQ|U|1445
6SV4|1|BQ|A|1446
6SV4|1|BQ|G|1447
6SV4|1|BQ|U|1448
6SV4|1|BQ|A|1449
6SV4|1|BQ|G|1450
*
6SV4|1|BQ|C|2354
6SV4|1|BQ|G|2355
6SV4|1|BQ|A|2356
6SV4|1|BQ|A|2357
6SV4|1|BQ|A|2358
6SV4|1|BQ|C|2359

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BE

60S ribosomal protein L4-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA