IL_6SV4_388

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

6SV4|1|BQ|G|3377

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_388 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1485

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6SV4|1|BQ|G|3328
6SV4|1|BQ|U|3329
6SV4|1|BQ|A|3330
*
6SV4|1|BQ|U|3373
6SV4|1|BQ|U|3374
6SV4|1|BQ|A|3375
6SV4|1|BQ|A|3376
6SV4|1|BQ|G|3377
6SV4|1|BQ|C|3378

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A