IL_6SV4_435
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6SV4|1|YQ|G|908, 6SV4|1|YQ|A|920, 6SV4|1|YQ|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_435 not in the Motif Atlas
- Homologous match to IL_5TBW_033
- Geometric discrepancy: 0.0913
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SV4|1|YQ|G|907
6SV4|1|YQ|G|908
6SV4|1|YQ|G|909
*
6SV4|1|YQ|U|919
6SV4|1|YQ|A|920
6SV4|1|YQ|A|921
6SV4|1|YQ|U|922
6SV4|1|YQ|C|923
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XQ
- 60S ribosomal protein L15-A
- Chain XW
- 60S ribosomal protein L2-A
- Chain XX
- 60S ribosomal protein L17-A
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