IL_6SV4_500
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_500 not in the Motif Atlas
- Homologous match to IL_5TBW_100
- Geometric discrepancy: 0.1242
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6SV4|1|YQ|U|2718
6SV4|1|YQ|U|2719
6SV4|1|YQ|G|2720
6SV4|1|YQ|A|2721
*
6SV4|1|YQ|U|2735
6SV4|1|YQ|A|2736
6SV4|1|YQ|C|2737
6SV4|1|YQ|A|2738
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XP
- 60S ribosomal protein L42-A
- Chain XV
- 60S ribosomal protein L29
- Chain YB
- 60S ribosomal protein L18-A
- Chain YI
- 60S ribosomal protein L5
- Chain YJ
- 60S ribosomal protein L21-A
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