IL_6SV4_517
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAUU*ACCA
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|YQ|C|3092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_517 not in the Motif Atlas
- Homologous match to IL_8C3A_126
- Geometric discrepancy: 0.1609
- The information below is about IL_8C3A_126
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- Major groove minor groove platform with tHH
- Motif group
- IL_14592.1
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
6SV4|1|YQ|U|3047
6SV4|1|YQ|A|3048
6SV4|1|YQ|A|3049
6SV4|1|YQ|U|3050
6SV4|1|YQ|U|3051
*
6SV4|1|YQ|A|3091
6SV4|1|YQ|C|3092
6SV4|1|YQ|C|3093
6SV4|1|YQ|A|3094
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XB
- 60S ribosomal protein L23-A
- Chain XE
- 60S ribosomal protein L24-A
- Chain YA
- 60S ribosomal protein L3
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