IL_6SV4_518

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6SV4|1|YQ|U|3056, 6SV4|1|YQ|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_518 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1304

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6SV4|1|YQ|U|3054
6SV4|1|YQ|U|3055
6SV4|1|YQ|U|3056
6SV4|1|YQ|U|3057
6SV4|1|YQ|U|3058
6SV4|1|YQ|G|3059
*
6SV4|1|YQ|C|3084
6SV4|1|YQ|G|3085
6SV4|1|YQ|A|3086
6SV4|1|YQ|A|3087
6SV4|1|YQ|G|3088

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XE

60S ribosomal protein L24-A

Chain YA

60S ribosomal protein L3

Chain YC

60S ribosomal protein L31-A