IL_6SV4_544
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAU*AUCGA
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|YS|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_544 not in the Motif Atlas
- Geometric match to IL_1GID_008
- Geometric discrepancy: 0.3777
- The information below is about IL_1GID_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
6SV4|1|YS|U|64
6SV4|1|YS|A|65
6SV4|1|YS|A|66
6SV4|1|YS|U|67
*
6SV4|1|YS|A|92
6SV4|1|YS|U|93
6SV4|1|YS|C|94
6SV4|1|YS|G|95
6SV4|1|YS|A|96
Current chains
- Chain YS
- 5.8S rRNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XK
- 60S ribosomal protein L26-A
- Chain YP
- 60S ribosomal protein L35-A
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: