IL_6SV4_565
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6SV4|1|ZQ|U|534, 6SV4|1|ZQ|U|558
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_565 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.1481
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|ZQ|G|531
6SV4|1|ZQ|A|532
6SV4|1|ZQ|A|533
6SV4|1|ZQ|U|534
6SV4|1|ZQ|G|535
6SV4|1|ZQ|U|536
6SV4|1|ZQ|A|537
6SV4|1|ZQ|G|538
*
6SV4|1|ZQ|U|553
6SV4|1|ZQ|A|554
6SV4|1|ZQ|U|555
6SV4|1|ZQ|U|556
6SV4|1|ZQ|A|557
6SV4|1|ZQ|U|558
6SV4|1|ZQ|A|559
6SV4|1|ZQ|G|560
6SV4|1|ZQ|C|561
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZH
- 60S ribosomal protein L20-A
- Chain zM
- 60S ribosomal protein L14-A
Coloring options: