IL_6SV4_573
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6SV4|1|ZQ|A|933, 6SV4|1|ZQ|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_573 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1038
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SV4|1|ZQ|G|805
6SV4|1|ZQ|A|806
6SV4|1|ZQ|A|807
6SV4|1|ZQ|A|808
6SV4|1|ZQ|G|809
*
6SV4|1|ZQ|C|931
6SV4|1|ZQ|U|932
6SV4|1|ZQ|A|933
6SV4|1|ZQ|G|934
6SV4|1|ZQ|U|935
6SV4|1|ZQ|A|936
6SV4|1|ZQ|G|937
6SV4|1|ZQ|C|938
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZE
- 60S ribosomal protein L4-A
- Chain zF
- 60S ribosomal protein L37-A
- Chain zJ
- 60S ribosomal protein L13-A
- Chain zQ
- 60S ribosomal protein L15-A
- Chain zR
- 60S ribosomal protein L28
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