IL_6SV4_612

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6SV4|1|ZQ|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_612 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.2065

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|ZQ|U|1627
6SV4|1|ZQ|C|1628
6SV4|1|ZQ|U|1629
6SV4|1|ZQ|U|1630
6SV4|1|ZQ|C|1631
*
6SV4|1|ZQ|G|1811
6SV4|1|ZQ|G|1812
6SV4|1|ZQ|A|1813
6SV4|1|ZQ|A|1814
6SV4|1|ZQ|U|1815
6SV4|1|ZQ|A|1816

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain zN

60S ribosomal protein L27-A