IL_6SV4_613

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_613 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1359

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6SV4|1|ZQ|U|1645
6SV4|1|ZQ|G|1646
6SV4|1|ZQ|A|1647
6SV4|1|ZQ|A|1648
6SV4|1|ZQ|U|1649
*
6SV4|1|ZQ|A|1806
6SV4|1|ZQ|G|1807
6SV4|1|ZQ|G|1808
6SV4|1|ZQ|A|1809
6SV4|1|ZQ|A|1810

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZN

60S ribosomal protein L34-A

Chain zN

60S ribosomal protein L27-A

Chain zW

60S ribosomal protein L2-A