IL_6SV4_628

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6SV4|1|ZQ|U|2159, 6SV4|1|ZQ|U|2175, 6SV4|1|ZQ|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_628 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0963

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|ZQ|C|2156
6SV4|1|ZQ|G|2157
6SV4|1|ZQ|A|2158
6SV4|1|ZQ|U|2159
6SV4|1|ZQ|G|2160
6SV4|1|ZQ|G|2161
*
6SV4|1|ZQ|U|2173
6SV4|1|ZQ|G|2174
6SV4|1|ZQ|U|2175
6SV4|1|ZQ|U|2176
6SV4|1|ZQ|G|2177
6SV4|1|ZQ|A|2178
6SV4|1|ZQ|C|2179
6SV4|1|ZQ|G|2180

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain 2c

Small subunit ribosomal RNA; SSU rRNA

Chain zT

60S ribosomal protein L43-A

Chain zW

60S ribosomal protein L2-A