IL_6SV4_723

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGGC*GUGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_723 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.2905

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|YQ|G|725
6SV4|1|YQ|G|726
6SV4|1|YQ|G|727
6SV4|1|YQ|G|728
6SV4|1|YQ|C|729
*
6SV4|1|YQ|G|740
6SV4|1|YQ|U|741
6SV4|1|YQ|G|742
6SV4|1|YQ|C|743
6SV4|1|YQ|A|744
6SV4|1|YQ|C|745

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YB

60S ribosomal protein L18-A