IL_6SV4_742

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAGCA*UUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_742 not in the Motif Atlas

Homologous match to IL_8C3A_144

Geometric discrepancy: 0.115

The information below is about IL_8C3A_144

Detailed Annotation

Minor groove platform related

Broad Annotation

No text annotation

Motif group

IL_45841.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|ZR|G|21
6SV4|1|ZR|A|22
6SV4|1|ZR|A|23
6SV4|1|ZR|A|24
6SV4|1|ZR|G|25
6SV4|1|ZR|C|26
6SV4|1|ZR|A|27
*
6SV4|1|ZR|U|53
6SV4|1|ZR|U|54
6SV4|1|ZR|A|55
6SV4|1|ZR|A|56
6SV4|1|ZR|G|57
6SV4|1|ZR|C|58

Current chains

Chain ZR

5S rRNA

Nearby chains

Chain ZI

60S ribosomal protein L5

Chain zG

60S ribosomal protein L11-A