IL_6SXO_009

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SXO_009 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.1727

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6SXO|1|L5|G|2946
6SXO|1|L5|G|2947
6SXO|1|L5|C|2948
*
6SXO|1|L5|G|3246
6SXO|1|L5|A|3247
6SXO|1|L5|C|3248

Current chains

Chain L5

28S ribosomal RNA including ES27L-B (2839-3265)

Nearby chains

Chain A

Proliferation-associated protein 2G4