IL_6T59_035

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6T59|1|54|G|748, 6T59|1|54|C|916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_035 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1766

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6T59|1|54|G|745
6T59|1|54|A|746
6T59|1|54|A|747
6T59|1|54|G|748
6T59|1|54|G|749
6T59|1|54|U|750
6T59|1|54|G|751
6T59|1|54|G|752
*
6T59|1|54|U|911
6T59|1|54|G|912
6T59|1|54|U|913
6T59|1|54|U|914
6T59|1|54|A|915
6T59|1|54|C|916
6T59|1|54|A|917
6T59|1|54|G|918
6T59|1|54|C|919

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain M3

Ribosomal protein L14

Chain S3

eL20