IL_6T59_049

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

6T59|1|54|A|1650, 6T59|1|54|G|1654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_049 not in the Motif Atlas

Homologous match to IL_5TBW_028

Geometric discrepancy: 0.0812

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6T59|1|54|G|1522
6T59|1|54|A|1523
6T59|1|54|A|1524
6T59|1|54|A|1525
6T59|1|54|G|1526
*
6T59|1|54|C|1648
6T59|1|54|U|1649
6T59|1|54|A|1650
6T59|1|54|G|1651
6T59|1|54|U|1652
6T59|1|54|A|1653
6T59|1|54|G|1654
6T59|1|54|C|1655

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain j3

Ribosomal protein L37