3D structure

PDB id
6T59 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CUCAUCAG*CUGGAG
Length
14 nucleotides
Bulged bases
6T59|1|54|U|1930, 6T59|1|54|C|1931, 6T59|1|54|G|2055, 6T59|1|54|A|2057
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T59_073 not in the Motif Atlas
Geometric match to IL_5TBW_051
Geometric discrepancy: 0.1612
The information below is about IL_5TBW_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_27086.1
Basepair signature
cWW-tWW-L-tWW-cWW-L
Number of instances in this motif group
2

Unit IDs

6T59|1|54|C|1926
6T59|1|54|U|1927
6T59|1|54|C|1928
6T59|1|54|A|1929
6T59|1|54|U|1930
6T59|1|54|C|1931
6T59|1|54|A|1932
6T59|1|54|G|1933
*
6T59|1|54|C|2053
6T59|1|54|U|2054
6T59|1|54|G|2055
6T59|1|54|G|2056
6T59|1|54|A|2057
6T59|1|54|G|2058

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain H3
uL6
Chain M3
Ribosomal protein L14
Chain O3
uL13
Chain S3
eL20
Chain m3
eL40

Coloring options:


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