IL_6T59_081

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_081 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0909

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6T59|1|54|G|2358
6T59|1|54|U|2359
6T59|1|54|A|2360
6T59|1|54|G|2361
6T59|1|54|U|2362
6T59|1|54|A|2363
6T59|1|54|G|2364
*
6T59|1|54|C|3858
6T59|1|54|G|3859
6T59|1|54|A|3860
6T59|1|54|A|3861
6T59|1|54|A|3862
6T59|1|54|C|3863

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain P3

uL22