IL_6T59_135

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_135 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.105

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6T59|1|54|C|4596
6T59|1|54|U|4597
6T59|1|54|C|4598
6T59|1|54|A|4599
6T59|1|54|G|4600
6T59|1|54|U|4601
6T59|1|54|A|4602
6T59|1|54|C|4603
*
6T59|1|54|G|4608
6T59|1|54|G|4609
6T59|1|54|A|4610
6T59|1|54|A|4611
6T59|1|54|C|4612
6T59|1|54|C|4613
6T59|1|54|G|4614

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain H3

uL6

Chain V3

Ribosomal protein L23

Chain m3

eL40