IL_6TC3_102

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6TC3|1|23S1|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_102 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.075

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6TC3|1|23S1|C|994
6TC3|1|23S1|C|995
6TC3|1|23S1|A|996
*
6TC3|1|23S1|U|1159
6TC3|1|23S1|G|1160

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L131

50S ribosomal protein L13

Chain L201

50S ribosomal protein L20

Chain L211

50S ribosomal protein L21

Chain L301

50S ribosomal protein L30