IL_6TC3_140

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6TC3|1|23S1|A|1801, 6TC3|1|23S1|C|1816, 6TC3|1|23S1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_140 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0527

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6TC3|1|23S1|U|1798
6TC3|1|23S1|G|1799
6TC3|1|23S1|C|1800
6TC3|1|23S1|A|1801
6TC3|1|23S1|A|1802
6TC3|1|23S1|A|1803
6TC3|1|23S1|C|1804
*
6TC3|1|23S1|G|1813
6TC3|1|23S1|G|1814
6TC3|1|23S1|A|1815
6TC3|1|23S1|C|1816
6TC3|1|23S1|G|1817
6TC3|1|23S1|U|1818
6TC3|1|23S1|A|1819
6TC3|1|23S1|U|1820
6TC3|1|23S1|A|1821

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 16S1

Small subunit ribosomal RNA; SSU rRNA

Chain L021

50S ribosomal protein L2