IL_6TC3_173

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6TC3|1|23S1|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_173 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0794

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6TC3|1|23S1|C|2636
6TC3|1|23S1|U|2637
6TC3|1|23S1|G|2638
6TC3|1|23S1|A|2639
6TC3|1|23S1|G|2640
*
6TC3|1|23S1|C|2774
6TC3|1|23S1|G|2775
6TC3|1|23S1|A|2776
6TC3|1|23S1|G|2777
6TC3|1|23S1|A|2778
6TC3|1|23S1|U|2779
6TC3|1|23S1|G|2780
6TC3|1|23S1|A|2781
6TC3|1|23S1|G|2782

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L131

50S ribosomal protein L13