IL_6TC3_176

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6TC3|1|23S1|U|2689, 6TC3|1|23S1|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TC3_176 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0963

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6TC3|1|23S1|U|2687
6TC3|1|23S1|G|2688
6TC3|1|23S1|U|2689
6TC3|1|23S1|U|2690
6TC3|1|23S1|C|2691
*
6TC3|1|23S1|G|2718
6TC3|1|23S1|G|2719
6TC3|1|23S1|U|2720
6TC3|1|23S1|A|2721
6TC3|1|23S1|G|2722

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L171

50S ribosomal protein L17

Chain L191

50S ribosomal protein L19