IL_6U48_013

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_013 not in the Motif Atlas

Geometric match to IL_5J7L_257

Geometric discrepancy: 0.0805

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6U48|1|CA|C|564
6U48|1|CA|C|565
6U48|1|CA|U|566
*
6U48|1|CA|A|575
6U48|1|CA|U|576
6U48|1|CA|G|577

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein uL4

Chain CM

50S ribosomal protein uL15

Chain CR

50S ribosomal protein bL20

Chain CS

50S ribosomal protein bL21