IL_6U48_034

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6U48|1|CA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_034 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0671

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6U48|1|CA|U|1018
6U48|1|CA|U|1019
6U48|1|CA|A|1020
6U48|1|CA|A|1021
6U48|1|CA|G|1022
6U48|1|CA|U|1023
6U48|1|CA|G|1024
*
6U48|1|CA|C|1140
6U48|1|CA|U|1141
6U48|1|CA|A|1142
6U48|1|CA|A|1143
6U48|1|CA|A|1144

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein bL36

Chain CG

50S ribosomal protein uL6

Chain CK

50S ribosomal protein uL13