IL_6U48_036

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6U48|1|CA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_036 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0776

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6U48|1|CA|G|1031
6U48|1|CA|A|1032
6U48|1|CA|U|1033
6U48|1|CA|G|1034
*
6U48|1|CA|C|1121
6U48|1|CA|G|1122
6U48|1|CA|C|1123

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein bL36

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CN

50S ribosomal protein uL16