IL_6U48_067

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6U48|1|CA|A|1801, 6U48|1|CA|C|1816, 6U48|1|CA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0787

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6U48|1|CA|U|1798
6U48|1|CA|G|1799
6U48|1|CA|C|1800
6U48|1|CA|A|1801
6U48|1|CA|A|1802
6U48|1|CA|A|1803
6U48|1|CA|C|1804
*
6U48|1|CA|G|1813
6U48|1|CA|G|1814
6U48|1|CA|A|1815
6U48|1|CA|C|1816
6U48|1|CA|G|1817
6U48|1|CA|U|1818
6U48|1|CA|A|1819
6U48|1|CA|U|1820
6U48|1|CA|A|1821

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein uL2