IL_6U48_099

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6U48|1|CA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_099 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0786

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6U48|1|CA|C|2636
6U48|1|CA|U|2637
6U48|1|CA|G|2638
6U48|1|CA|A|2639
6U48|1|CA|G|2640
*
6U48|1|CA|C|2774
6U48|1|CA|G|2775
6U48|1|CA|A|2776
6U48|1|CA|G|2777
6U48|1|CA|A|2778
6U48|1|CA|U|2779
6U48|1|CA|G|2780
6U48|1|CA|A|2781
6U48|1|CA|G|2782

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein uL3

Chain CK

50S ribosomal protein uL13