IL_6U48_102

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6U48|1|CA|U|2689, 6U48|1|CA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_102 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0793

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6U48|1|CA|U|2687
6U48|1|CA|G|2688
6U48|1|CA|U|2689
6U48|1|CA|U|2690
6U48|1|CA|C|2691
*
6U48|1|CA|G|2718
6U48|1|CA|G|2719
6U48|1|CA|U|2720
6U48|1|CA|A|2721
6U48|1|CA|G|2722

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein uL3

Chain CO

50S ribosomal protein bL17

Chain CQ

50S ribosomal protein bL19