IL_6U48_114

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UAAG*CGUUAUAA

Length

12 nucleotides

Bulged bases

6U48|1|CA|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U48_114 not in the Motif Atlas

Geometric match to IL_1U63_003

Geometric discrepancy: 0.3855

The information below is about IL_1U63_003

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_24134.1

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|U|82
6U48|1|CA|A|83
6U48|1|CA|A|84
6U48|1|CA|G|85
*
6U48|1|CA|C|97
6U48|1|CA|G|98
6U48|1|CA|U|99
6U48|1|CA|U|100
6U48|1|CA|A|101
6U48|1|CA|U|102
6U48|1|CA|A|103
6U48|1|CA|A|104

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CV

50S ribosomal protein uL24

Chain CZ

50S ribosomal protein uL29