IL_6V3D_029
3D structure
- PDB id
- 6V3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GCACUG*CAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V3D_029 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3997
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6V3D|1|AN1|G|862
6V3D|1|AN1|C|863
6V3D|1|AN1|A|864
6V3D|1|AN1|C|865
6V3D|1|AN1|U|866
6V3D|1|AN1|G|867
*
6V3D|1|AN1|C|906
6V3D|1|AN1|A|907
6V3D|1|AN1|A|908
6V3D|1|AN1|A|909
6V3D|1|AN1|C|910
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L16
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