IL_6V3D_073

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6V3D|1|AN1|A|1934, 6V3D|1|AN1|U|1940, 6V3D|1|AN1|U|1959

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3D_073 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.2196

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6V3D|1|AN1|C|1930
6V3D|1|AN1|G|1931
6V3D|1|AN1|A|1932
6V3D|1|AN1|A|1933
6V3D|1|AN1|A|1934
6V3D|1|AN1|5MU|1935
6V3D|1|AN1|U|1936
6V3D|1|AN1|C|1937
6V3D|1|AN1|C|1938
6V3D|1|AN1|U|1939
6V3D|1|AN1|U|1940
6V3D|1|AN1|G|1941
*
6V3D|1|AN1|C|1957
6V3D|1|AN1|C|1958
6V3D|1|AN1|U|1959
6V3D|1|AN1|G|1960

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2