IL_6V3D_102

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CCUAGUAC*GGACCAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3D_102 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.3555

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6V3D|1|AN1|C|2647
6V3D|1|AN1|C|2648
6V3D|1|AN1|U|2649
6V3D|1|AN1|A|2650
6V3D|1|AN1|G|2651
6V3D|1|AN1|U|2652
6V3D|1|AN1|A|2653
6V3D|1|AN1|C|2654
*
6V3D|1|AN1|G|2659
6V3D|1|AN1|G|2660
6V3D|1|AN1|A|2661
6V3D|1|AN1|C|2662
6V3D|1|AN1|C|2663
6V3D|1|AN1|A|2664
6V3D|1|AN1|G|2665

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6