IL_6VWN_026
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6VWN|1|1|A|532, 6VWN|1|1|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWN_026 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.3573
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6VWN|1|1|G|515
6VWN|1|1|U|516
6VWN|1|1|G|517
6VWN|1|1|C|518
6VWN|1|1|C|519
6VWN|1|1|A|520
6VWN|1|1|G|521
*
6VWN|1|1|C|528
6VWN|1|1|G|529
6VWN|1|1|G|530
6VWN|1|1|U|531
6VWN|1|1|A|532
6VWN|1|1|A|533
6VWN|1|1|U|534
6VWN|1|1|A|535
6VWN|1|1|C|536
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 4
- HIV ribosomal frameshift signal
- Chain b
- 30S ribosomal protein S3
- Chain c
- 30S ribosomal protein S4
- Chain k
- 30S ribosomal protein S12
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