IL_6VWN_036

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6VWN|1|1|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_036 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.4141

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6VWN|1|1|U|684
6VWN|1|1|G|685
6VWN|1|1|U|686
6VWN|1|1|A|687
6VWN|1|1|G|688
*
6VWN|1|1|C|699
6VWN|1|1|G|700
6VWN|1|1|U|701
6VWN|1|1|A|702
6VWN|1|1|G|703
6VWN|1|1|A|704
6VWN|1|1|G|705
6VWN|1|1|A|706

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain j

30S ribosomal protein S11