IL_6VWN_161

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6VWN|1|2|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_161 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0927

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6VWN|1|2|C|2636
6VWN|1|2|U|2637
6VWN|1|2|G|2638
6VWN|1|2|A|2639
6VWN|1|2|G|2640
*
6VWN|1|2|C|2774
6VWN|1|2|G|2775
6VWN|1|2|A|2776
6VWN|1|2|G|2777
6VWN|1|2|A|2778
6VWN|1|2|U|2779
6VWN|1|2|G|2780
6VWN|1|2|A|2781
6VWN|1|2|G|2782

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13