IL_6VYT_099

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6VYT|1|a|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYT_099 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.0754

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6VYT|1|a|C|994
6VYT|1|a|C|995
6VYT|1|a|A|996
*
6VYT|1|a|U|1159
6VYT|1|a|G|1160

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L21

Chain f

50S ribosomal protein L30

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20