IL_6VYT_171
3D structure
- PDB id
- 6VYT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6VYT|1|a|G|2780
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYT_171 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.0682
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6VYT|1|a|C|2636
6VYT|1|a|U|2637
6VYT|1|a|G|2638
6VYT|1|a|A|2639
6VYT|1|a|G|2640
*
6VYT|1|a|C|2774
6VYT|1|a|G|2775
6VYT|1|a|A|2776
6VYT|1|a|G|2777
6VYT|1|a|A|2778
6VYT|1|a|U|2779
6VYT|1|a|G|2780
6VYT|1|a|A|2781
6VYT|1|a|G|2782
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L3
- Chain s
- 50S ribosomal protein L13
Coloring options: