3D structure

PDB id
6VYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.9 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
6VYX|1|D|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VYX_030 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0823
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6VYX|1|D|U|605
6VYX|1|D|G|606
6VYX|1|D|A|607
6VYX|1|D|A|608
6VYX|1|D|A|609
6VYX|1|D|U|610
6VYX|1|D|C|611
6VYX|1|D|C|612
*
6VYX|1|D|G|628
6VYX|1|D|A|629
6VYX|1|D|A|630
6VYX|1|D|C|631
6VYX|1|D|U|632
6VYX|1|D|G|633

Current chains

Chain D
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S4
Chain N
30S ribosomal protein S8
Chain U
30S ribosomal protein S16
Chain V
30S ribosomal protein S17

Coloring options:


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