IL_6VYY_139

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6VYY|1|a|A|1801, 6VYY|1|a|C|1816, 6VYY|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_139 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.049

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6VYY|1|a|U|1798
6VYY|1|a|G|1799
6VYY|1|a|C|1800
6VYY|1|a|A|1801
6VYY|1|a|A|1802
6VYY|1|a|A|1803
6VYY|1|a|C|1804
*
6VYY|1|a|G|1813
6VYY|1|a|G|1814
6VYY|1|a|A|1815
6VYY|1|a|C|1816
6VYY|1|a|G|1817
6VYY|1|a|U|1818
6VYY|1|a|A|1819
6VYY|1|a|U|1820
6VYY|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain h

50S ribosomal protein L2