IL_6VYY_155

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

6VYY|1|a|U|2111, 6VYY|1|a|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_155 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.5163

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6VYY|1|a|G|2110
6VYY|1|a|U|2111
6VYY|1|a|G|2112
6VYY|1|a|U|2113
6VYY|1|a|A|2114
6VYY|1|a|G|2115
6VYY|1|a|G|2116
6VYY|1|a|A|2117
6VYY|1|a|U|2118
6VYY|1|a|A|2119
6VYY|1|a|G|2120
6VYY|1|a|G|2121
*
6VYY|1|a|C|2177
6VYY|1|a|C|2178
6VYY|1|a|C|2179

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA